Dependents

The following applications build on kallisto, bustools, and/or kb_python:

• ARCHS4: Massive Mining of Publicly Available RNA-seq Data from Human and Mouse using kallisto

• arkas: rapid and reproducible RNA-Seq analysis for end users

• DEE2: Digital Expression Explorer 2

• sleuth: Differential analysis of RNA-Seq

• elysium: RNA-seq alignment in the cloud

• EndoDB: a database of endothelial cell transcriptomics data

• Google Cloud Pilot RNA Sequencing for CCLE and TCGA

• kallisto-sra: Nextflow implementation of kallisto RNA-Seq Tools fetching samples directly from SRA

• metaR: utilizing the Language Workbench Technology to facilitate data analysis in R

• MiPanda: Michigan Portal for the Analysis of NGS Data

• kallisto | bustools: Single-cell RNA-seq pre-processing

• SkeletalVis: exploration of skeletal biology related expression datasets

• The Lair: interactive (re)analysis of published RNA-Seq data with kallisto and sleuth